pkg-descr

fastDNAml is a program for estimating maximum likelihood phylogenetic trees
from nucleotide sequences.

WWW: http://geta.life.uiuc.edu/~gary/programs/fastDNAml.html

fastDNAml is an attempt to solve the same problem as Joseph Felsenstein's
DNAML, but to do so faster and using less memory, so that larger trees and/or
more bootstrap replicates become tractable. Much of fastDNAml is merely a
recoding of the PHYLIP 3.3 DNAML program from PASCAL to C.

For Felsenstein's phylogenetic analysis softwares, including the latest
versions of DNAML, visit the PHYLIP Home Page:
http://evolution.genetics.washington.edu/phylip.html

When publishing work that based on results from fastDNAml please cite:

Felsenstein, J. 1981. Evolutionary trees from DNA sequences:
A maximum likelihood approach. J. Mol. Evol. 17: 368-376.

Olsen, G. J., Matsuda, H., Hagstrom, R., and Overbeek, R. 1994.
fastDNAml: A tool for construction of phylogenetic trees of DNA
sequences using maximum likelihood. Comput. Appl. Biosci. 10: 41-48.

pkg-plist

bin/fastDNAml
bin/fastdnaml/ae2dnaml
bin/fastdnaml/bootstrap
bin/fastdnaml/categories
bin/fastdnaml/categories_file
bin/fastdnaml/checkpoint_summary
bin/fastdnaml/clean_checkpoints
bin/fastdnaml/clean_jumbles
bin/fastdnaml/dnaml_progress
bin/fastdnaml/fastDNAml_boot
bin/fastdnaml/fastDNAml_loop
bin/fastdnaml/frequencies
bin/fastdnaml/global
bin/fastdnaml/iterate_rates
bin/fastdnaml/jumble
bin/fastdnaml/min_info
bin/fastdnaml/n_categories
bin/fastdnaml/n_files
bin/fastdnaml/out.PID
bin/fastdnaml/outgroup
bin/fastdnaml/printdata
bin/fastdnaml/quickadd
bin/fastdnaml/restart
bin/fastdnaml/scores
bin/fastdnaml/transition
bin/fastdnaml/treefile
bin/fastdnaml/treefile2prolog
bin/fastdnaml/trees2NEXUS
bin/fastdnaml/trees2prolog
bin/fastdnaml/userlengths
bin/fastdnaml/usertree
bin/fastdnaml/usertrees
bin/fastdnaml/weights
bin/fastdnaml/weights_categories
%%PORTDOCS%%%%DOCSDIR%%/fastDNAml_doc_1.2.txt
%%PORTDOCS%%%%DOCSDIR%%/fastDNAml_scripts.txt
@dirrm bin/fastdnaml
%%PORTDOCS%%@dirrm %%DOCSDIR%%