pkg-descr

MAFFT offers a range of multiple alignment strategies, L-INS-i
(accurate; recommended for <200 sequences), FFT-NS-i (standard speed and
accuracy), FFT-NS-2 (fast; recommended for >2,000 sequences), etc.
According to BAliBASE and other benchmark tests, L-INS-i is one of the
most accurate methods currently available.

MAFFT has been described:
K. Katoh, K. Misawa, K. Kuma and T. Miyata (Nucleic Acids Res. 30:
3059-3066, 2002) MAFFT: a novel method for rapid multiple sequence
alignment based on fast Fourier transform.

WWW: http://align.bmr.kyushu-u.ac.jp/mafft

pkg-plist

bin/dummy
bin/mafft
bin/disttbfast
bin/dndblast
bin/dndfast7
bin/dndpre
bin/dndpre2
bin/dvtditr
bin/f2cl
bin/getlag
bin/mafft-profile
bin/multi2hat3s
bin/pair2hat3s
bin/pairalign
bin/pairlocalalign
bin/score
bin/setcore
bin/sextet5
bin/splitseq
bin/tbfast
bin/tbfast2
%%PORTDOCS%%%%DOCSDIR%%/readme
%%EXAMPLESDIR%%/sample
%%EXAMPLESDIR%%/sample.fftns2
%%EXAMPLESDIR%%/sample.fftnsi
%%EXAMPLESDIR%%/sample.gins1
%%EXAMPLESDIR%%/sample.ginsi
%%EXAMPLESDIR%%/sample.lins1
%%EXAMPLESDIR%%/sample.linsi
%%PORTDOCS%%@dirrm %%DOCSDIR%%
@dirrm %%EXAMPLESDIR%%